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Molekulární charakterisace parvalbuminového genu ryb: evoluční pohled a forenzní aplikace pro identifikaci a autentizaci druhů ryb
dc.contributor.advisorHorká, Petra
dc.creatorMukherjee, Subham
dc.date.accessioned2024-04-08T11:11:44Z
dc.date.available2024-04-08T11:11:44Z
dc.date.issued2024
dc.identifier.urihttp://hdl.handle.net/20.500.11956/188710
dc.description.abstractAbstract Parvalbumin (pvalb), a low molecular weight calcium-binding protein, plays a crucial role in regulating Ca2+ switching in fast-twitch muscle fibres and has been identified as a major cause of fish-induced food allergies. The molecular evolution of pvalb genes in teleost fish and its cause, duplication of the whole genome, was investigated, revealing high diversity and complex gene repertoires, making detection and identification challenging. This study provides robust genomic evidence of the complex evolution of parvalbumin genes in teleost fish. In addition to its role as a potent allergen, the pvalb gene, a nuclear gene, can serve as a valuable molecular marker. Keeping this in mind, a real-time PCR assay is developed to detect and quantify two European anglerfish species simultaneously, Lophius piscatorius and Lophius budegassa, which are susceptible to illegal species substitutions in the global seafood trade. The assay targets the intronic region of the pvalb gene, demonstrating high specificity, efficiency, and robustness, making it a potential forensic tool to prevent food fraud and ensure the accurate identification of fish species. Furthermore, a standardised quantitative PCR-based method is presented for the β-pvalb gene in Lophius piscatorius, utilising a plasmid DNA calibrator...en_US
dc.languageEnglishcs_CZ
dc.language.isoen_US
dc.publisherUniverzita Karlova, Přírodovědecká fakultacs_CZ
dc.subjectgencs_CZ
dc.subjectparvalbumincs_CZ
dc.subjectsekvencecs_CZ
dc.subjectparalogcs_CZ
dc.subjectpseudogencs_CZ
dc.subjectPCRcs_CZ
dc.subjectklonovánícs_CZ
dc.subjectgeneen_US
dc.subjectparvalbuminen_US
dc.subjectsequenceen_US
dc.subjectparalogen_US
dc.subjectpseudogeneen_US
dc.subjectPCRen_US
dc.subjectcloningen_US
dc.titleMolecular Characterisation of Parvalbumin Gene: Evolutionary Insights and Forensic Applications for Fish Species Identification and Authenticationen_US
dc.typedizertační prácecs_CZ
dcterms.created2024
dcterms.dateAccepted2024-03-06
dc.description.departmentInstitute for Environmental Studiesen_US
dc.description.departmentÚstav pro životní prostředícs_CZ
dc.description.facultyFaculty of Scienceen_US
dc.description.facultyPřírodovědecká fakultacs_CZ
dc.identifier.repId211395
dc.title.translatedMolekulární charakterisace parvalbuminového genu ryb: evoluční pohled a forenzní aplikace pro identifikaci a autentizaci druhů rybcs_CZ
dc.contributor.refereeKalous, Lukáš
dc.contributor.refereeFlajšhans, Martin
thesis.degree.namePh.D.
thesis.degree.leveldoktorskécs_CZ
thesis.degree.disciplineEnvironmental Scienceen_US
thesis.degree.disciplineEnvironmental Sciencecs_CZ
thesis.degree.programEnvironmental Scienceen_US
thesis.degree.programEnvironmental Sciencecs_CZ
uk.thesis.typedizertační prácecs_CZ
uk.taxonomy.organization-csPřírodovědecká fakulta::Ústav pro životní prostředícs_CZ
uk.taxonomy.organization-enFaculty of Science::Institute for Environmental Studiesen_US
uk.faculty-name.csPřírodovědecká fakultacs_CZ
uk.faculty-name.enFaculty of Scienceen_US
uk.faculty-abbr.csPřFcs_CZ
uk.degree-discipline.csEnvironmental Sciencecs_CZ
uk.degree-discipline.enEnvironmental Scienceen_US
uk.degree-program.csEnvironmental Sciencecs_CZ
uk.degree-program.enEnvironmental Scienceen_US
thesis.grade.csProspěl/acs_CZ
thesis.grade.enPassen_US
uk.abstract.enAbstract Parvalbumin (pvalb), a low molecular weight calcium-binding protein, plays a crucial role in regulating Ca2+ switching in fast-twitch muscle fibres and has been identified as a major cause of fish-induced food allergies. The molecular evolution of pvalb genes in teleost fish and its cause, duplication of the whole genome, was investigated, revealing high diversity and complex gene repertoires, making detection and identification challenging. This study provides robust genomic evidence of the complex evolution of parvalbumin genes in teleost fish. In addition to its role as a potent allergen, the pvalb gene, a nuclear gene, can serve as a valuable molecular marker. Keeping this in mind, a real-time PCR assay is developed to detect and quantify two European anglerfish species simultaneously, Lophius piscatorius and Lophius budegassa, which are susceptible to illegal species substitutions in the global seafood trade. The assay targets the intronic region of the pvalb gene, demonstrating high specificity, efficiency, and robustness, making it a potential forensic tool to prevent food fraud and ensure the accurate identification of fish species. Furthermore, a standardised quantitative PCR-based method is presented for the β-pvalb gene in Lophius piscatorius, utilising a plasmid DNA calibrator...en_US
uk.file-availabilityN
uk.grantorUniverzita Karlova, Přírodovědecká fakulta, Ústav pro životní prostředícs_CZ
thesis.grade.codeP
dc.contributor.consultantMusilová, Zuzana
uk.publication-placePrahacs_CZ
dc.date.embargoEndDate05-04-2026
uk.embargo.reasonochrana informací chráněných zvláštním zákonemcs
uk.embargo.reasonprotection of information protected by a special lawen
uk.thesis.defenceStatusO


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